Class: GenomicRangeArray

Extends

• epiviz.datatypes.GenomicArray

Classes

RowItemWrapper

Members

protected_values*

Methods

inherited boundaries(){epiviz.datatypes.GenomicRange}

datatypes/genomic-array.js, line 45

Returns:

Type	Description
epiviz.datatypes.GenomicRange

concatValues(second, secondIndex){Object}

datatypes/genomic-range-array.js, line 123

Name	Type	Description
second	epiviz.datatypes.GenomicRangeArray
secondIndex	number

Returns:

Type	Description
Object

inherited createNew(measurement, boundaries, globalStartIndex, values){epiviz.datatypes.GenomicArray}

datatypes/genomic-array.js, line 95

Factory method

.

Factory method

Name	Type	Description
measurement	epiviz.measurements.Measurement
boundaries	epiviz.datatypes.GenomicRange
globalStartIndex	number
values	*

Returns:

Type	Description
epiviz.datatypes.GenomicArray

end(index){number}

datatypes/genomic-range-array.js, line 258

Name	Type	Description
index	number

Returns:

Type	Description
number

foreach(func)

datatypes/genomic-range-array.js, line 220

Iterates through all genomic ranges until func returns something that evaluates to true

.

Iterates through all genomic ranges until func returns something that evaluates to true

Name	Type	Description
func	function

inherited get(index){*}

datatypes/genomic-array.js, line 65

Name	Type	Description
index	number

Returns:

Type	Description
*

inherited getByGlobalIndex(globalIndex){*}

datatypes/genomic-array.js, line 76

Name	Type	Description
globalIndex	number

Returns:

Type	Description
*

inherited globalStartIndex(){number}

datatypes/genomic-array.js, line 50

Returns:

Type	Description
number

id(index){string}

datatypes/genomic-range-array.js, line 242

Name	Type	Description
index	number

Returns:

Type	Description
string

inherited measurement(){epiviz.measurements.Measurement}

datatypes/genomic-array.js, line 57

Returns:

Type	Description
epiviz.measurements.Measurement

inherited merge(arr){epiviz.datatypes.GenomicArray}

datatypes/genomic-array.js, line 103

Merges two genomic arrays together by global index, eliminating common rows (where indices match) IMPORTANT: This method fails if the given arrays are not overlapping or in continuation of one another

.

Merges two genomic arrays together by global index, eliminating common rows (where indices match) IMPORTANT: This method fails if the given arrays are not overlapping or in continuation of one another

Name	Type	Description
arr	epiviz.datatypes.GenomicArray

Returns:

Type	Description
epiviz.datatypes.GenomicArray

metadata(column, index){*}

datatypes/genomic-range-array.js, line 275

Name	Type	Description
column	string
index	number

Returns:

Type	Description
*

metadataColumns(){Array.<string>}

datatypes/genomic-range-array.js, line 230

Returns:

Type	Description
Array.<string>	the names of the metadata columns associated with the epiviz.datatypes.GenomicRangeArray instance

ranges(){epiviz.datatypes.GenomicRangeArray}

datatypes/genomic-range-array.js, line 214

Returns:

Type	Description
epiviz.datatypes.GenomicRangeArray

rowMetadata(index){Object.<string, *>}

datatypes/genomic-range-array.js, line 284

Name	Type	Description
index	number

Returns:

Type	Description
Object.<string, *>

inherited size(){number}

datatypes/genomic-array.js, line 70

Returns:

Type	Description
number

start(index){number}

datatypes/genomic-range-array.js, line 250

Name	Type	Description
index	number

Returns:

Type	Description
number

strand(index){string}

datatypes/genomic-range-array.js, line 266

Name	Type	Description
index	number

Returns:

Type	Description
string

toString(){string}

datatypes/genomic-range-array.js, line 297

Returns:

Type	Description
string

trim(range){epiviz.datatypes.GenomicRangeArray}

datatypes/genomic-range-array.js, line 159

Name	Type	Description
range	epiviz.datatypes.GenomicRange

Returns:

Type	Description
epiviz.datatypes.GenomicRangeArray