Default settings for the various plotting functions in metavizr.
metavizControl(aggregateAtDepth = 3, aggregateFun = function(x) colSums(x),
valuesAnnotationFuns = NULL, maxDepth = 4, maxHistory = 3,
maxValue = NULL, minValue = NULL, title = "", n = 10000,
rankFun = stats::sd, norm = TRUE, log = FALSE,
featureSelection = NULL)
Arguments
- aggregateAtDepth
- Level of the tree to aggregate counts at by default.
- aggregateFun
- Function to aggregate counts by at the aggregateAtDepth level.
- valuesAnnotationFuns
- Function for error bars.
- maxDepth
- Level of the tree to display by default in icicle view.
- maxHistory
- Value for caching.
- maxValue
- Maximum value to display.
- minValue
- Minimum value to display.
- title
- title.
- n
- Number of OTUs to include in ranking.
- rankFun
- Ranking function - single vector function.
- norm
- Normalize MRexperiment object.
- log
- Log tranformation of MRexperiment object.
Value
List of setting parameters.
Examples
settings = metavizControl()