Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps and other user-supplied visualizations. It also includes data from the Gene Expression Barcode project for transcriptome visualization. It has a flexible plugin framework so users can add d3 visualizations. You can see a video tour here.

The Epivizr Bioconductor package implements two-way communication between the R/Bioconductor computational genomics environment and Epiviz. Objects in an R session can be displayed as tracks or plots on Epiviz. Epivizr uses WebSockets for communication between the browser JavaScript client and the R environment, the same technology underlying the popular Shiny system for authoring interactive web-based reports in R.

Applications


Epiviz

Epiviz

Epiviz is an interactive visualization tool for functional genomics data

Website Github

metaviz

Metaviz

Metaviz is an interactive visualization tool for metagenomics datasets

Website Github

epiviz desktop

Epiviz Desktop

Desktop application for the epiviz genomics data browser

Download Github

Tools and Packages


epivizR

epivizR is an R/Bioconductor package that handles genomic data from R session to the epiviz app.

Github Bioconductor

metavizR

metavizR is an R package that handles metagenomics datasets from an R session to the metaviz app.

Github Bioconductor

epivizrData

epivizrData manages various bioconductor data types and makes them available to the epivizR and the epiviz app.

Github Bioconductor

epivizrServer

epivizrServer is a server management package that creates and manages the websocket session between R and epiviz app.

Github Bioconductor