Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps and other user-supplied visualizations. It also includes data from the Gene Expression Barcode project for transcriptome visualization. It has a flexible plugin framework so users can add d3 visualizations. You can see a video tour here.

The Epivizr Bioconductor package implements two-way communication between the R/Bioconductor computational genomics environment and Epiviz. Objects in an R session can be displayed as tracks or plots on Epiviz. Epivizr uses WebSockets for communication between the browser JavaScript client and the R environment, the same technology underlying the popular Shiny system for authoring interactive web-based reports in R.

Applications


Epiviz

Epiviz Feed

Epiviz Feed combines interactive visualization of genomic data with proactive statistical analyses.

Website Github

Epiviz

Epiviz

Epiviz is an interactive exploratory and visualization tool for functional genomics data

Website Github

metaviz

Metaviz

Metaviz is an interactive visualization tool for 16S metagenomics datasets using a novel visualization to navigate taxonomic hierarchies

Website Github

epiviz desktop

Epiviz Desktop

Desktop application for the epiviz genomics data browser. Also supports visualization of local datasets through epivizR package.

Download Github

Tools and Packages


Epiviz File Server

Query, Transform and Visualize genomic data directly from indexed files formats.

Github Docs

epivizR

epivizR is an R/Bioconductor package that handles genomic data from R session to the epiviz app.

Github Bioconductor Docs

Epiviz Web Components

Epiviz Components are extensible and reusable HTML elements to visualize genomic data.

Github Website

metavizR

metavizR is an R package that handles metagenomics datasets from an R session to the metaviz app.

Github Docs

epivizrData

epivizrData manages various bioconductor data types and makes them available to the epivizR and the epiviz app.

Github Bioconductor Docs

epivizrServer

epivizrServer is a server management package that creates and manages the websocket session between R and epiviz app.

Github Bioconductor Docs

Publications